We have only the many and various legends and even they continue to change with the changing political needs of the Church. - Ishwar Sharan

Muthiah's allusion is to Pantaenus the Alexandrian, who is said to have visited "the land of the Indians" before 190 CE. The first reference is made by Eusebius, in his Ecclesiastical History, which others follow, but Dr. A. Mingana, an authority on the spread of Christianity in India, quoted by C.B. Firth in An Introduction to Indian Church History, asserts, "... the India they refer to is without doubt Arabia Felix. The fact has been recognised by all historians since Assemani and Tillemont, and has been considered as established even by such a conservative writer as Medleycott. It will be a matter of surprise if any responsible author will mention in the future Pantaenus in connection with India proper.

The bones of "St. Thomas" were collected – there was no doubt this time in the Portuguese mind that they were his – and later, with due ceremony, placed in a Chinese coffer with silver locks, along with the bones of the Chola king, another "disciple" whose remains had been found nearby, and those of two children. The key to the coffer was then sent to the Viceroy at Goa, but two years later Fr. Penteado broke the locks as he felt that the bones were in a poor condition and needed attention. He transferred them to a wooden chest and hid this in a place known only to himself and Rodrigo Alvares. The chest was then presumed to be lost, and, in 1530, a new search was mounted for the relics. Diogo Fernandez was again called in and through his intercession with Rodrigo Alvares, the chest was found in a decayed condition under the main altar of the church – for a small church, the first Christian church to rise on the Mylapore beach, had been built, in 1523, by Augustinian friars beside the newly found “St. Thomas” tomb.

The consensus among most historians who do not have a theological axe to grind, is that the first Christians to arrive in India, landing at Cranganore, Kerala, came in 345 CE. They were four hundred refugees belonging to seven tribes of West Asia, who were fleeing religious persecution by the Persian Shapor II. Their leader was a Syrian who is known to history as Knae Thomman, Thomas Cananeus, Thomas of Cana, or Thomas the Merchant. It is probably this man whom the Syrian Christians later converted into the first century apostle-martyr St. Thomas. Though the myth of St. Thomas coming to Kerala in 52 CE was invented by Syrian Christians, it was resurrected and embellished in the sixteenth century by Jesuit and Franciscan missionaries who needed a pious story of persecution to cover up their own persecution of the Hindus. During this period they and their Portuguese masters destroyed the great Shiva temple on the Mylapore beach, the Murugan temple on Little Mount and the Hindu temple on Big Mount, and built Christian churches on the ruins.