Symbioses are central in the evolution of complexity; have evolved many times and are critical to the lifestyles of many animals and plants and also … - Nancy A. Moran

Among the many early revelations from molecular phylogenetic studies of bacteria (Woese, 1987) was the recognition that the mycoplasmas represented an evolutionarily derived condition rather than a primitive one, as once believed. Now that phylogenetic relationships and genome sizes are determined for a broader array of organisms, it is clear that the mycoplasmas are just one example of genome shrinkage that has occurred in a variety of obligately host-associated bacteria. Other prominent examples are Rickettsia and related pathogens within the α-proteobacteria; insect symbionts within the γ-proteobacteria, as exemplified by Buchnera aphidicola in aphids; the chlamydiae; and the parasitic spirochetes, such as Borrelia burgdorferi (the agent of Lyme disease).

Life cycles that incorporate discrete, morphologically distnct phases predominate among animals.

The guts of honey bee workers contain a distinctive community of bacterial species. They are microaerophilic or anaerobic, and were not clearly deliniated by earlier studies relying on laboratory culture of isolates under atmospheric oxygen levels. Recently, a more complete picture of the potential metabolism and functions of these bacteria have been possible, using genomic approaches based on metagenomic samples, as well as cultured isolates. Of these, most are host-restricted and are generally absent outside adult guts.