While the belief that Thomas settled in South India came about as an honest mistake, the claim that he was martyred by Brahmins was always a deliberate lie, playing upon a possible confusion between the consonants of the expression “be ruhme”, meaning “with a spear”, and those of “Brahma” (Semitic alphabets usually don’t specify vowels). That was the gratitude Hindus received in return for extending their hospitality to the Christian refugees: being blackened as the murderers of the refugees’ own hero. If the Indian bishops have any honour, they will themselves remove this false allegation from their discourse and their monuments, including the cathedral in Chennai built at the site of Thomas’s purported martyrdom (actually the site of a Shiva temple). Indeed, they will issue a historic declaration expressing their indebtedness to Hindu hospitality and pluralism and pledging to renounce their anti-Hindu animus.

As these diggings did not produce the required result, Diogo Fernandez was asked, in 1523, to excavate a third tomb which lay partly under the foundation of a dilapidated building that had been occupied by the Portuguese. He refused at first but was persuaded by the attending priest, Fr. Antonio Gil, who heard his confession and that of the two men, Braz Fernandez and Diogo Lourenco, who would assist him in the pious enterprise. They then began the excavation of a deep and elaborate, and very much empty, tomb. It was Saturday afternoon, and they continued the work into the late evening, when, on the suggestion of Diogo Fernandez, they abandoned their unproductive labours and retired for the night. The excavation was left open and unattended until the next morning, a Sunday, when the men began digging again. It was not long now before the grave disgorged bones that were "much worn out", portions of skull and spine, and a clay pot of earth "bedewed with blood", with a thigh bone in it, and hidden in the red earth an iron Malabar spearhead shaped like an olive leaf, which, after fifteen Christian centuries, still had a piece of wooden shaft miraculously preserved in its socket.

This statement is patently absurd in the face of the evidence of the Acts itself. Mylapore has never been “a desert country” as Mazdai’s land is described in the Acts – his city is not described at all – and has never had a Zoroastrian king or a mountain with an ancient royal sepulchre in it. Mylapore has always been known as a Hindu pilgrimage town and busy port, with jasmine gardens, jungles, peacocks and lush coconut groves.

In fact, the Hindu community is doubly wronged. It not only did not kill the fictional St. Thomas but for the saint's cause it lost a number of important temples to the aggressive religious bigotry of the Portuguese. It took more than fifty years for the Portuguese to bring down the original Kapaleeswara Temple and build a St. Thomas Church in its place. I wonder how many Indian lives were lost in defence of the Great God Shiva and His house on the Mylapore beach.... The Archaeological Survey of India is deeply involved in the cover-up at San Thome Cathedral. It is a government department and therefore subject to the dictates of the politicians in power and their policy of minority appeasement. Even former directors of the Tamil Nadu Department of Archaeology like Dr. R. Nagaswamy, who have all the details of the destruction of the Kapaleeswara Temple by the Portuguese and the building of San Thome Cathedral on the ancient temple site, are not willing to speak out.

The Portuguese were familiar with the St. Thomas legend long before they arrived in India. They knew Marco Polo’s Il Milione, made popular in Europe in the fourteenth century, and the earlier sixth century Latin romances De Miraculis [Beati] Thomae and Passio Thomae. The Passio Thomae was a redaction of the Acts of Thomas, but both Latin books contained a major diversion from the original story that would, like the seashore tomb in the Milione, permanently alter the course of the St. Thomas legend after the Portuguese had established themselves in Mylapore. The Passio Thomae had St. Thomas killed by a Pagan priest with a sword, and De Miraculis Thomae had him killed by a Pagan priest with a lance. These stories were at odds with the one found in the Acts of Thomas, which had the apostle executed on the orders of a Persian king, by four royal soldiers with spears. The Portuguese preferred the Pagan-priest-with-a-lance story found in De Miraculis Thomae. They added Marco Polo’s seaside tomb to it, and elements from Syrian Christian traditions that they had gathered in Malabar, and concocted a legend, largely European in character, that they identified with various Hindu sites in Malabar and Mylapore. The Portuguese story has not changed very much till today, though it has many variations.

The same could be said of the testimony of the second and third century Clement and Origen, and fourth century Eusebius, but the difference is that their earlier date and closeness to the alleged events and its first traditions – which are not recorded in a stylized religious fiction like the Acts – give them more credibility. They, too, had knowledge of the Acts and Teaching but chose to ignore them and declare that St. Thomas went to Parthia. Eusebius, who had done research at Edessa for his Ecclesiastical History but lived at Caesarea Maritima in Palestine, the port from which St. Thomas would have had to embark for India (unless he used the Gulf of Aqaba port of Eilat or the Egyptian ports of Elim or Berenice), certainly knew both traditions thoroughly and is a principal witness. Moreover he held unorthodox religious views and would have been sympathetic to the Christian theosophy expounded in the Acts. Yet he states that St. Thomas went from Jerusalem by land to proselytise the Parthians. This supports the tradition that St. Thomas went to Edessa to meet his disciple Addai, whom he had sent earlier to meet the Abgar – the same Edessa that would later honour him with a book, a mummy, a tomb, and a cult.

...But if for the sake of argument it is agreed that the depositions of Diogo Fernandez are not fabricated – he could have been an uninformed witness to the “discovery” (though it is very unlikely) – then it must be said that the relics themselves most certainly are, in keeping with the ancient tradition of fraud so dear to the Church, 60 Veda Prakash, in Indiavil Saint Thomas Kattukkadai, shows that the relics were produced out of materials brought from Goa and then planted in the empty tomb. He also shows that the Portuguese reworked the existing Syrian Christian version of the myth, changing the Syriac be ruhme, meaning “by spear”, to read Brahmins in order to implicate Brahmins in the apostle’s murder. The Malabar tradition was thus brought into line with the European romance, De Miraculis Thomae, where St. Thomas is killed by a Pagan priest with a lance – though the contradiction of lance in the story and spear-head in the reliquary remains today. ... The question of whether the Portuguese relics are genuine or not – and whether the South Indian legend is history or not – will be conclusively answered as soon as the Archbishop of Madras gives them to independent forensic experts for testing. But he may be also aware that such a gesture would be redundant, as all of the bones of St. Thomas were resting in the cathedral at Ortona, Italy, while Diogo Fernandez was digging for them in Mylapore. They had been there since 1258, and before that at Chios, Greece, and Edessa, and in 1566 the Bishop of Ortona had issued a Deed of Verification for these bones, which, in itself, proves that the bones produced by the Portuguese out of the Mylapore tomb cannot possibly be those of St. Thomas. ... The Portuguese themselves appear to have treated this “momentous discovery” in a cavalier fashion, which is why the relics got lost in 1525. When they were located again, in 1530, the bones and spearhead – shaped like an olive leaf, though there are no olive trees in India – were transferred to a small box, locked up in a chapel in the church, and the key kept by the pastor. ... This church, originally built in 1523 and called San Thome or San Thome de Meliapore, was subsequently enlarged and extended, and the encroachment on the Kapaleeswara Temple began in earnest. The Christians had done this before, building a church against a temple wall and then taking over the temple, and that the Shiva temple survived as long as it did, up to 1566 according to some authorities, is grand testimony to the patient and courageous resistance the Hindus of Mylapore had put up against this ruthless Catholic power. Diogo Fernandez’s “St. Thomas” relics still remain in the church today. The iron spearhead and piece of skull are kept in a monstrance, along with the relics of St. Francis Xavier, St. Isabella, St. Vincentio and the Martyrs of Morocco. The first “St. Thomas” tomb, which contained the “white” skeleton that was sent to Goa, is empty and ignored, but the second “St. Thomas” tomb is pointed out to pilgrims and tourists. It contains the remainder of Diogo Fernandez’s “findings”, the pieces of spine and thigh bone, and, presumably, the pot of “blood-bedewed” earth. ... Yet this is not the end of the bones at San Thome. The cathedral also has in its possession a piece of Church-certified Ortona bone which it obtained from Cardinal Tisserant in 1953, after he had deposited the apostle’s right arm at Kodungallur (and demoted him from being the great Apostle of the East to simply being the Apostle of India). The pastor of San Thome can now say with some pride that he is the keeper of a real St. Thomas bone – keeping in mind that the acceptance of the Ortona gift is also an admission that the Portuguese relics in his care are not those of St. Thomas.

As Hindu spokesman Arun Shourie writes: “By an accounting [of the calumnies heaped upon India and Hinduism] I do not of course mean some declaration saying, ‘Sorry’. By an accounting Imean that the calumnies would be listed; the grounds on which they were based would be listed, and the Church would declare whether, in the light of what is known now, the grounds were justified or not; and the motives which impelled those calumnies would be exhumed.”

The destruction of the seashore Temple of Kapaleeswara is said to have taken place in 1561. The new temple at its present present site, about one km to the west, was built by pious Hindu votaries about three hundred years ago, i.e., about two hundred and fifty years after its destruction. When the Santhome Church was repaired in the beginning of the current century, many stones with edicts were found there. Among them one mentions Poompavai, the girl whom Tirujnanasambandar is said to have miraculously revived from her ashes kept in an urn.

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The concocted absurdities found in the Wikipedia Thomas the Apostle article today, which has neither citations or credible references, can be exposed with a single example: the statement in the Thomas and India subsection of the main article that the king who executed Judas Thomas for sorcery and crimes against women, Mazdai (also Masdai; Misdaeus in Greek), was "the local king at Mylapore". This is a preposterous statement. The name Mazdai is Persian and specifically identifies a person who is Zoroastrian by religion. Mazdaism identifies a worshiper of Ahura Mazda and is a synonym for Zoroastrianism. Associating the Acts of Thomas and its Persian king Mazdai with Mylapore is motivated Christian scholarship – something "Dr." Deivanayakam of the Madras-Mylapore Archdiocese would produce – and the fact that the Wikipedia administrator, Tinucherian, allows such unsupported statements to stand unchallenged shows that he is deeply involved in the crime of writing a deliberately false and perverted history of Christianity in Mylapore.

But it was a scholar-evangelist from the Anglican Church, Bishop Robert Caldwell (1814-91), who pioneered what now flourishes as the “Dravidian” identity. In his Comparative Grammar of the Dravidian Race, he argued that the south Indian mind was structurally different from the Sanskrit mind. Linguistic speculations were turned into a race theory. He characterized the Dravidians as “ignorant and dense”, accusing the Brahmins―the cunning Aryan agents―for keeping them in shackles through the imposition of Sanskrit and its religion. His successor, another prolific Anglican missionary scholar, Bishop G.U. Pope, started to glorify the Tamil classics era, insisting that its underpinnings were Christianity, not Hinduism. Though subsequently rejected by serious scholars of Tamil culture, the idea was successfully planted that Hinduism had corrupted the “originally pure” Tamil culture by adding Sanskrit and Pagan ideas.

The Portuguese had begun to settle around Big Mount as early as 1523 – the same year they "discovered" the tomb of "St. Thomas" – and one of the first to take up residence there was Diogo Fernandez. He would succeed in erecting a small chapel on the hill before 1545, but the construction of the church, called Our Lady of Expectation, did not commence until 1547. It was built on the east-west alignment of the temple foundation – the ancient granite base of the flag pole is on the eastern side of the church and this writer had observed it in 1991 – but the Portuguese reversed this order in keeping with established Christian practice when building on a Pagan site, and the church entrance is on the western side.

One version of the fable asserts that he converted 6,850 Brahmins, 2,800 Kshatriyas, 3,750 Vaishyas and 4,250 Shudras. Another version maintains it was 17,490 Brahmins, 350 Vaishyas and 4,280 Shudras – Kshatriyas are not included except for the Raja of Tiruvanchikulam. In a third version 40 Jews are among the converts, and in a fourth the converts are the Raja’s son and son-in-law, some Brahmins, and a lone barber to keep them all trimmed and shaved (he also would have had to circumcise the male converts, as Judas Thomas was an orthodox Jew and not part of St. Paul's innovations in favour of the Gentiles).

Bishop Giovanni dei Marignolli, the Franciscan papal legate who built a Roman Catholic church in Quilon, in 1348, is the first person to use the appellation "St. Thomas" Christians. He did this to distinguish Syrian converts from low-caste Hindu converts in his congregation. This allowed the former Nestorians to retain their caste status as Roman Catholics. The appellation "St. Thomas" Christian is thus of Roman Catholic origin and indicates a social division within the Roman Catholic Church.